Yes, currents can be dangerous in Komodo, and they deserve more attention than almost any other water-related risk in the park. The islands sit in a region where large volumes of water move between seas through relatively narrow channels. That movement creates the nutrient-rich conditions that make Komodo spectacular for manta rays and marine life, but it can also produce fast drift, eddies, and current lines that are difficult to judge from the surface.
The important thing is that not every snorkeling stop has strong current. Experienced crews know which locations are appropriate for beginners and which should only be entered under the right tide. At a drift site, the boat may drop swimmers at one point and collect them farther down-current. At a protected beach, you may barely notice the water moving at all. Those are two very different types of snorkeling, even though both appear on a “Komodo tour.”
Never enter before the guide gives the signal, and do not assume being a strong pool swimmer makes you immune to current. Use a life jacket when advised, stay with the group, and pay attention to the pickup plan before you jump in. If the water looks uncomfortable to you, sitting out a stop is a perfectly reasonable decision. There will be other places to swim.

